A public health emergency was declared by the Nigerian Federal Ministry of Health in northeastern Nigeria in June 2016 and escalated by the United Nations to a Level 3 Emergency in August 2016, after confirmation of wild poliovirus and measles outbreaks and evidence that prevalence of acute malnutrition exceeded emergency thresholds in areas newly liberated from Boko Haram control (1,2). To monitor rates of mortality, acute malnutrition among children, infectious disease morbidity, and humanitarian interventions after the emergency declaration, a series of cross-sectional household surveys were conducted in fall 2016 and winter 2017 in the northeastern states of Borno and Yobe using a cluster methodology. All-cause mortality among all age groups (crude mortality) and among children aged <5 years (under-five mortality) were above emergency thresholds in 2017 and significantly increased from 2016, despite evidence of increased preventive public health interventions, including measles vaccination. Access to treatment for common childhood illnesses remained very low, as evidenced by reports of fewer than one in six children in areas outside Borno’s capital receiving any care for diarrhea. The data from these surveys provide evidence of excessively high mortality (particularly among children), highlight the impact of ongoing violence, and underscore the need for humanitarian efforts to scale up access to treatment services in conflict-affected areas.

After the emergency declarations, the Nigerian National Bureau of Statistics, in coordination with the National Population Commission, the Federal Ministry of Health, United Nations Children’s Fund, and CDC collaborated to conduct a series of two-stage cluster surveys to assess mortality, malnutrition, and access to and receipt of essential public health services. This report presents findings from the first two rounds of data collection (October 11–November 17, 2016, and February 13–March 29, 2017).

Enumeration areas from the national sampling frame were used as clusters for Yobe. Because of ongoing displacement in Borno, clusters there included both settled villages and camps of internally displaced persons. Within each state, local government areas were grouped into substate regions based on geography and conflict impact. Data were stratified by region (Borno: Southern, Central, and the Borno capital area comprising Maiduguri and Jere; Yobe: Central, Southern, and Northern). Clusters for each region were drawn independently, with probability of selection proportional to size. Within selected clusters, households were selected applying systematic random selection. Areas that were known to be inaccessible because of security concerns were excluded. Adjusting for nonresponse, a sample size of 1,800 households was calculated for each of the two states in the first round. In the second round, 1,860 households were included for Borno, and the Southern Yobe region was oversampled to allow for disaggregated analysis of areas with greater conflict, yielding a target sample of 2,480 households in Yobe. All age-eligible children were measured using standard anthropometric procedures (3). Nutritional status was classified using 2006 World Health Organization (WHO) growth standards (4). Pearson’s chi-square test was used to determine significant differences (p<0.05) between rounds. This project was reviewed in accordance with CDC human subjects protection procedures and was determined to be nonresearch and not subject to review by an institutional review board.

The final sample in Borno comprised 1,719 households (including 1,557 children aged 0–59 months) in the first round and 1,729 households (1,813 children) in the second. In the first and second rounds in Yobe, 1,667 households (1,692 children) and 2,393 households (2,729 children), respectively, were selected. Among selected clusters, 13 (7.2%) in the first round and 15 (6.9%) in the second round were inaccessible or abandoned. Household response rates in the accessed clusters exceeded 96% in all regions in both rounds.

Prevalence of global acute malnutrition (weight-for-height z-scores less than -2 or bilateral pitting edema) among children aged 0–59 months was significantly higher in the first round than the second round in Maiduguri and Jere (13.0% compared with 6.4%) and in both Southern (10.7% compared with 7.8%) and Northern Yobe (14.3% compared with 8.6%). During the first round, prevalence of global acute malnutrition ranged from 8.9% to 14.3% by region and from 6.4% to 8.6% in the second round (Table 1). Crude and under-five mortality rates increased from the first to the second round in all regions. The increase in crude mortality was significant in two Borno regions (Southern and Central) and two Yobe regions (Southern and Northern) (p<0.05). The under-five mortality rate was approximately three times higher than the crude mortality rate in Southern Borno for both rounds and during the first round in Central Borno and Central and Northern Yobe (Table 1). Crude and under-five mortality both exceeded the emergency thresholds of one and two deaths per 10,000 per day, respectively, in Central Borno as well as Central and Northern Yobe during the second round. The under-five morality rate in Southern Yobe also exceeded the emergency threshold.

Use of public health interventions was assessed using the following four indicators: 1) measles vaccination coverage, 2) receipt of one or more services through a public health outreach campaign, 3) receipt of anthelmintic prophylaxis in the 6 months preceding the survey, and 4) receipt of fortified cereals (Table 2). The proportion of children aged 12–59 months that had received at least 1 dose of a measles-containing vaccine, as determined by either vaccination card or parental recall, was <65% in all regions in the first round (range = 28.8%–63.5%). Measles vaccination coverage increased significantly in the second round in all regions except Southern Borno, with the greatest absolute increases in Central Borno (from 33.7% to 78.9%) and Northern Yobe (from 28.8% to 67.1%). No region attained the 95% vaccination coverage threshold necessary to establish herd immunity. The proportion of households reporting receipt of one or more of the maternal, neonatal, and child health services (such as vaccinations, nutritional screening, birth registration, and bed-net distributions) during a government sponsored public health outreach campaign was <10% in all regions except Southern Borno (11.9%) during the first round of surveys. The percentage of children aged 12–59 months who received anthelmintic prophylaxis during the 6 months preceding the survey was also <10% in all regions (range = 2.9%–6.2%) during the first round. Increases in the receipt of services through the outreach campaign (range = 11.7%–26.6%) and of anthelmintic prophylaxis use (range = 7.8%–21.1%) were significant in all regions during the second round of surveys. However, no increase was observed in the distributions of fortified cereals.

The prevalence of diarrhea among children aged <5 years during the preceding 2 weeks and receipt of appropriate treatment (oral rehydration solution or zinc) were analyzed as an indication of morbidity and access to primary care, respectively (Table 3). Prevalence of diarrhea was lower in Borno state regions (range = 14.1%–19.5%) than in Yobe state (range = 23.8%–31.5%) during the first round. In the second round, the prevalence of diarrhea did not change significantly in Yobe but increased significantly in all Borno regions. Among children with diarrhea, less than a third received oral rehydration solution, zinc, or both in either round, and <8% received the appropriate treatment. The proportion of children receiving treatment significantly declined in Southern Yobe and Central Yobe (for zinc only) between survey rounds.


The prevalence of global acute malnutrition did not exceed the WHO emergency threshold of 15% in either survey (5); prevalence either improved (Maiduguri and Jere; Northern and Southern Yobe) or remained stable (Southern and Central Borno; Central Yobe) between rounds. Despite these findings, the crude mortality rate increased significantly in all but two of the surveyed regions (Southern Borno and Central Yobe). Although the study was not designed to detect significant changes in child mortality, an increase in the under-five mortality rate was observed in all regions. Increased mortality in the absence of concurrent increase in acute malnutrition suggests possible causes other than food insecurity, such as increased morbidity and mortality from common childhood illnesses.

The findings from these surveys provide evidence of increases in the use of selected public health interventions. Measles vaccination coverage approximately doubled in several regions of Borno and Yobe after a January 2017 campaign to vaccinate an estimated 4.7 million children, which was recommended after the first survey round. Both the percentage of households that received services during the government sponsored health campaign and the percentage of children who received anthelmintic prophylaxis increased significantly in all regions. Emphasis on active outreach through mobile clinics and household visits, particularly in the November–December 2016 public health campaigns, might have contributed to these increases. Yet receipt of all four public health interventions remains well below target levels, and there has been no improvement in the distribution of fortified cereal.

The percentage of children who received appropriate treatment for diarrhea, assessed as an indication of primary health care service use, was low overall. In both surveys, fewer than one in three children with diarrhea received any treatment, and the proportion of children who received treatment either failed to increase (Borno) or declined (Southern Yobe). Conflict-related destruction has resulted in the loss of two thirds of Borno health facilities (6). Southern Yobe, particularly in the local government areas of Gujba and Gulani, experienced increased violence in the months between survey rounds (7). Constrained population movement and loss of health care facilities might partially explain the poor access to recommended treatment.

The findings in this report are subject to at least two limitations. First, because of the active conflict, some areas were inaccessible to survey teams, and it is likely that health and nutritional outcomes are worse in these regions. Second, to prioritize rapid data collection, the emergency surveys were designed with relatively small sample sizes that result in estimates with relatively high standard errors (particularly for under-five mortality) and do not allow for disaggregated analysis of subpopulations, such as displaced persons.

The conflict in northeastern Nigeria, which has resulted in mass destruction of health facilities and limited access to treatment, has contributed to emergency levels of mortality throughout the affected region, particularly among children. Ongoing humanitarian activities in Nigeria prioritize interventions known to reduce maternal and child undernutrition and mortality (8). However, survey results indicate that substantial gaps in use of these important interventions remain. Until effective interventions are adequately used, they will have limited effect on large-scale mortality, particularly among vulnerable populations including children.

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